Package beagleutil

package beagleutil
  • Class
    Description
    ChromIds
    Class ChromIds is a singleton class that represents a list of chromosome identifiers.
    ChromInterval
    Class ChromInterval represents a chromosome interval whose end points are genome coordinates.
    CompHapSegment
    Class CompHapSegment represents a copied haplotype segment in a composite reference haplotype.
    IntInterval
    Interface IntInterval represents an interval of consecutive integers.
    PbwtDivUpdater
    Class PbwtDivUpdater updates prefix and divergence arrays using the positional Burrows-Wheeler transform (PBWT).
    PbwtUpdater
    Class PbwtDivUpdater updates prefix arrays using the positional Burrows-Wheeler transform (PBWT).
    SampleIds
    Class SampleIds is a singleton class that represents a list of sample identifiers.
    ThreadSafeIndexer<T>
    Class ThreadSafeIndexer indexes objects.