Package blbutil

Interface VcfFileIt<E>

Type Parameters:
E - the type of the elements returned by this iterator's next() method.
All Superinterfaces:
AutoCloseable, Closeable, FileIt<E>, Iterator<E>, SampleFileIt<E>
All Known Implementing Classes:
RefIt, VcfIt
public interface VcfFileIt<E> extends SampleFileIt<E>

An iterator for records in a VCF file. Each record contains data for the same set of samples.

Instances of class VcfFileIt are not thread-safe.

  • Method Details

    • vcfHeader

      VcfHeader vcfHeader()
      Returns the VCF meta-information lines and header line
      Returns:
      the VCF meta-information lines and header line