Package imp

Class ImpLS

java.lang.Object
imp.ImpLS
public final class ImpLS extends Object

Class ImpLS computes HMM state probabilities at genotyped markers in the target haplotypes.

Instances of class ImpLS are thread-safe.

  • Method Details

    • stateProbs

      public static AtomicReferenceArray<StateProbs> stateProbs(ImpData impData)
      Returns estimated HMM state probabilities at genotyped markers for each target haplotype. The returned array maps each target haplotype index to the target haplotype's HMM state probabilities.
      Parameters:
      impData - the input data for genotype imputation
      Returns:
      a list of HMM state probabilities at genotyped markers for each target haplotype.
      Throws:
      NullPointerException - if impData == null