phase Class Hierarchy

Package Hierarchies:

All Packages

Class Hierarchy

java.lang.Object
- phase.BasicPhaseStates
- phase.CodedSteps
- phase.EstPhase
- phase.FixedPhaseData
- phase.FwdPbwtPhaser
- phase.HmmParamData
- phase.HmmStateProbs
- phase.HmmUpdater
- phase.Ibs2
- phase.Ibs2Markers
- phase.Ibs2Sets
- phase.LowFreqPbwtPhaseIbs
- phase.LowFreqPhaseIbs
- phase.LowFreqPhaseStates
- phase.MarkerCluster
- phase.ParamEstimates
- phase.PbwtIbsData
- phase.PbwtPhaseIbs
- phase.PbwtPhaser
- phase.PbwtRecPhaser
- phase.PhaseBaum2 (implements phase.PhaseBaum)
- phase.PhaseData
- phase.PhaseLS
- phase.RevPbwtPhaser
- phase.SamplePhase
- phase.SampleSeg (implements java.lang.Comparable<T>, beagleutil.IntInterval)
- phase.Stage2Baum
- phase.Stage2Haps
- phase.SwapRate

Interface Hierarchy

phase.PhaseBaum

Enum Hierarchy

java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
  - phase.SamplePhase.ClustType