casacore::TiledFileAccess Class Reference

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#include <TiledFileAccess.h>

Public Member Functions
	TiledFileAccess (const String &fileName, Int64 fileOffset, const IPosition &shape, const IPosition &tileShape, DataType dataType, const TSMOption &=TSMOption(), Bool writable=False)
	Create a TiledFileAccess object. More...
	TiledFileAccess (const String &fileName, Int64 fileOffset, const IPosition &shape, const IPosition &tileShape, DataType dataType, const TSMOption &, Bool writable, Bool bigEndian)
	Create a TiledFileAccess object. More...
	~TiledFileAccess ()
Bool	isWritable () const
	Is the file writable? More...
DataType	dataType () const
Array< Bool >	getBool (const Slicer &section)
	Get part of the array. More...
Array< uChar >	getUChar (const Slicer &section)
Array< Short >	getShort (const Slicer &section)
Array< Int >	getInt (const Slicer &section)
Array< Float >	getFloat (const Slicer &section)
Array< Double >	getDouble (const Slicer &section)
Array< Complex >	getComplex (const Slicer &section)
Array< DComplex >	getDComplex (const Slicer &section)
void	get (Array< Bool > &, const Slicer &section)
void	get (Array< uChar > &, const Slicer &section)
void	get (Array< Short > &, const Slicer &section)
void	get (Array< Int > &, const Slicer &section)
void	get (Array< Float > &, const Slicer &section)
void	get (Array< Double > &, const Slicer &section)
void	get (Array< Complex > &, const Slicer &section)
void	get (Array< DComplex > &, const Slicer &section)
Array< Float >	getFloat (const Slicer &section, Float scale, Float offset, uChar deleteValue, Bool examineForDeleteValues=True)
	Get the array and scale/offset the data using the given values. More...
Array< Float >	getFloat (const Slicer &section, Float scale, Float offset, Short deleteValue, Bool examineForDeleteValues=True)
Array< Float >	getFloat (const Slicer &section, Float scale, Float offset, Int deleteValue, Bool examineForDeleteValues=True)
void	get (Array< Float > &, const Slicer &section, Float scale, Float offset, uChar deleteValue, Bool examineForDeleteValues=True)
void	get (Array< Float > &, const Slicer &section, Float scale, Float offset, Short deleteValue, Bool examineForDeleteValues=True)
void	get (Array< Float > &, const Slicer &section, Float scale, Float offset, Int deleteValue, Bool examineForDeleteValues=True)
void	put (const Array< Bool > &, const Slicer &section)
	Put part of the array. More...
void	put (const Array< uChar > &, const Slicer &section)
void	put (const Array< Short > &, const Slicer &section)
void	put (const Array< Int > &, const Slicer &section)
void	put (const Array< Float > &, const Slicer &section)
void	put (const Array< Double > &, const Slicer &section)
void	put (const Array< Complex > &, const Slicer &section)
void	put (const Array< DComplex > &, const Slicer &section)
void	flush ()
	Flush the cache. More...
void	clearCache ()
	Empty the cache. More...
void	showCacheStatistics (ostream &os) const
	Show the cache statistics. More...
const IPosition &	shape () const
	Get the shape of the array. More...
const IPosition &	tileShape () const
	Get the shape of the tiles. More...
void	setMaximumCacheSize (uInt64 nbytes)
	Set the maximum cache size (in bytes). More...
uInt64	maximumCacheSize () const
	Get the maximum cache size (in bytes). More...
uInt	cacheSize () const
	Get the current cache size (in buckets). More...
void	setCacheSize (const IPosition &sliceShape, const IPosition &axisPath, Bool forceSmaller=True)
	Set the cache size using the given access pattern. More...
void	setCacheSize (const IPosition &sliceShape, const IPosition &windowStart, const IPosition &windowLength, const IPosition &axisPath, Bool forceSmaller=True)
void	setCacheSize (uInt nbuckets, Bool forceSmaller=True)
	Set the cache size for accessing the data. More...

Static Public Member Functions
static IPosition	makeTileShape (const IPosition &arrayShape, uInt nrPixelsPerTile=32768)
	Make a tile shape from the array shape to fit as closely as possible the number of pixels in the tile. More...

Private Member Functions
	TiledFileAccess (const TiledFileAccess &)
	Forbid copy constructor and assignment. More...
TiledFileAccess &	operator= (const TiledFileAccess &)

Private Attributes
TSMCube *	itsCube
TiledFileHelper *	itsTSM
uInt	itsLocalPixelSize
Bool	itsWritable
DataType	itsDataType

Detailed Description

Tiled access to an array in a file.

Intended use:

Public interface

Review Status

Test programs:

tTiledFileAccess

Prerequisite

• Description of Tiled Storage Manager in module file Tables.h
• ROTiledStManAccessor for a discussion of the maximum cache size

Synopsis

TiledFileAccess is a class that makes it possible to access an arbitrary array in a file using the tiled storage manager classes. It can handle arrays of any type supported by the tiled storage managers. The array can be in big or little endian canonical format.

See ROTiledStManAccessor for a more detailed discussion.

Motivation

This class makes it possible to access an image in a FITS file.

Example

// Define the object which also opens the file.
// The (float) array starts at offset 2880.
TiledFileAccess tfa ("fits.file", 2880, IPosition(2,512,512),
IPosition(2,512,1), TpFloat);
// Get all the data.
Array<Float> data = tfa.getFloat (Slicer(IPosition(2,0,0), tfa.shape()));

Definition at line 92 of file TiledFileAccess.h.

Constructor & Destructor Documentation

TiledFileAccess() [1/3]

casacore::TiledFileAccess::TiledFileAccess	(	const String &	fileName,
		Int64	fileOffset,
		const IPosition &	shape,
		const IPosition &	tileShape,
		DataType	dataType,
		const TSMOption &	= TSMOption(),
		Bool	writable = False
	)

Create a TiledFileAccess object.

The data is assumed to be in local canonical format (thus big endian on e.g. SUN and little endian on e.g. PC). The TSMOption determines how the file is accessed.

TiledFileAccess() [2/3]

casacore::TiledFileAccess::TiledFileAccess	(	const String &	fileName,
		Int64	fileOffset,
		const IPosition &	shape,
		const IPosition &	tileShape,
		DataType	dataType,
		const TSMOption &	,
		Bool	writable,
		Bool	bigEndian
	)

Create a TiledFileAccess object.

The endian format of the data is explicitly given.

~TiledFileAccess()

casacore::TiledFileAccess::~TiledFileAccess

(

)

TiledFileAccess() [3/3]

casacore::TiledFileAccess::TiledFileAccess ( const TiledFileAccess &  )

private

Forbid copy constructor and assignment.

Member Function Documentation

cacheSize()

uInt casacore::TiledFileAccess::cacheSize ( ) const

inline

Get the current cache size (in buckets).

Definition at line 208 of file TiledFileAccess.h.

References casacore::TSMCube::cacheSize(), and itsCube.

clearCache()

void casacore::TiledFileAccess::clearCache ( )

inline

Empty the cache.

It will flush the cache as needed and remove all buckets from it resulting in a possibly large drop in memory used. It'll also clear the userSetCache_p flag.

Definition at line 185 of file TiledFileAccess.h.

References casacore::TSMCube::emptyCache(), and itsCube.

dataType()

DataType casacore::TiledFileAccess::dataType ( ) const

inline

Definition at line 119 of file TiledFileAccess.h.

References itsDataType.

flush()

void casacore::TiledFileAccess::flush ( )

inline

Flush the cache.

Definition at line 178 of file TiledFileAccess.h.

References casacore::TSMCube::flushCache(), and itsCube.

get() [1/11]

void casacore::TiledFileAccess::get	(	Array< Bool > &	,
		const Slicer &	section
	)

get() [2/11]

void casacore::TiledFileAccess::get	(	Array< Complex > &	,
		const Slicer &	section
	)

get() [3/11]

void casacore::TiledFileAccess::get	(	Array< DComplex > &	,
		const Slicer &	section
	)

get() [4/11]

void casacore::TiledFileAccess::get	(	Array< Double > &	,
		const Slicer &	section
	)

get() [5/11]

void casacore::TiledFileAccess::get	(	Array< Float > &	,
		const Slicer &	section
	)

get() [6/11]

void casacore::TiledFileAccess::get	(	Array< Float > &	,
		const Slicer &	section,
		Float	scale,
		Float	offset,
		Int	deleteValue,
		Bool	examineForDeleteValues = True
	)

get() [7/11]

void casacore::TiledFileAccess::get	(	Array< Float > &	,
		const Slicer &	section,
		Float	scale,
		Float	offset,
		Short	deleteValue,
		Bool	examineForDeleteValues = True
	)

get() [8/11]

void casacore::TiledFileAccess::get	(	Array< Float > &	,
		const Slicer &	section,
		Float	scale,
		Float	offset,
		uChar	deleteValue,
		Bool	examineForDeleteValues = True
	)

get() [9/11]

void casacore::TiledFileAccess::get	(	Array< Int > &	,
		const Slicer &	section
	)

get() [10/11]

void casacore::TiledFileAccess::get	(	Array< Short > &	,
		const Slicer &	section
	)

get() [11/11]

void casacore::TiledFileAccess::get	(	Array< uChar > &	,
		const Slicer &	section
	)

getBool()

Array<Bool> casacore::TiledFileAccess::getBool

(

const Slicer &

section

)

Get part of the array.

The Array object is resized if needed.

getComplex()

Array<Complex> casacore::TiledFileAccess::getComplex

(

const Slicer &

section

)

getDComplex()

Array<DComplex> casacore::TiledFileAccess::getDComplex

(

const Slicer &

section

)

getDouble()

Array<Double> casacore::TiledFileAccess::getDouble

(

const Slicer &

section

)

getFloat() [1/4]

Array<Float> casacore::TiledFileAccess::getFloat

(

const Slicer &

section

)

getFloat() [2/4]

Array<Float> casacore::TiledFileAccess::getFloat	(	const Slicer &	section,
		Float	scale,
		Float	offset,
		Int	deleteValue,
		Bool	examineForDeleteValues = True
	)

getFloat() [3/4]

Array<Float> casacore::TiledFileAccess::getFloat	(	const Slicer &	section,
		Float	scale,
		Float	offset,
		Short	deleteValue,
		Bool	examineForDeleteValues = True
	)

getFloat() [4/4]

Array<Float> casacore::TiledFileAccess::getFloat	(	const Slicer &	section,
		Float	scale,
		Float	offset,
		uChar	deleteValue,
		Bool	examineForDeleteValues = True
	)

Get the array and scale/offset the data using the given values.

It is meant for FITS, so for now they can only be used for TpUChar, TpShort or TpInt TiledFileAccess objects. A deleteValue is set to a NaN without being scaled.

getInt()

Array<Int> casacore::TiledFileAccess::getInt

(

const Slicer &

section

)

getShort()

Array<Short> casacore::TiledFileAccess::getShort

(

const Slicer &

section

)

getUChar()

Array<uChar> casacore::TiledFileAccess::getUChar

(

const Slicer &

section

)

isWritable()

Bool casacore::TiledFileAccess::isWritable ( ) const

inline

Is the file writable?

Definition at line 116 of file TiledFileAccess.h.

References itsWritable.

makeTileShape()

static IPosition casacore::TiledFileAccess::makeTileShape ( const IPosition &  arrayShape, uInt  nrPixelsPerTile = 32768  )

static

Make a tile shape from the array shape to fit as closely as possible the number of pixels in the tile.

maximumCacheSize()

uInt64 casacore::TiledFileAccess::maximumCacheSize

(

)

const

Get the maximum cache size (in bytes).

operator=()

TiledFileAccess& casacore::TiledFileAccess::operator= ( const TiledFileAccess &  )

private

put() [1/8]

void casacore::TiledFileAccess::put	(	const Array< Bool > &	,
		const Slicer &	section
	)

Put part of the array.

put() [2/8]

void casacore::TiledFileAccess::put	(	const Array< Complex > &	,
		const Slicer &	section
	)

put() [3/8]

void casacore::TiledFileAccess::put	(	const Array< DComplex > &	,
		const Slicer &	section
	)

put() [4/8]

void casacore::TiledFileAccess::put	(	const Array< Double > &	,
		const Slicer &	section
	)

put() [5/8]

void casacore::TiledFileAccess::put	(	const Array< Float > &	,
		const Slicer &	section
	)

put() [6/8]

void casacore::TiledFileAccess::put	(	const Array< Int > &	,
		const Slicer &	section
	)

put() [7/8]

void casacore::TiledFileAccess::put	(	const Array< Short > &	,
		const Slicer &	section
	)

put() [8/8]

void casacore::TiledFileAccess::put	(	const Array< uChar > &	,
		const Slicer &	section
	)

setCacheSize() [1/3]

void casacore::TiledFileAccess::setCacheSize ( const IPosition &  sliceShape, const IPosition &  axisPath, Bool  forceSmaller = True  )

inline

Set the cache size using the given access pattern.

Definition at line 213 of file TiledFileAccess.h.

References itsCube, casacore::TSMCube::setCacheSize(), and casacore::True.

setCacheSize() [2/3]

void casacore::TiledFileAccess::setCacheSize ( const IPosition &  sliceShape, const IPosition &  windowStart, const IPosition &  windowLength, const IPosition &  axisPath, Bool  forceSmaller = True  )

inline

Definition at line 218 of file TiledFileAccess.h.

References itsCube, casacore::TSMCube::setCacheSize(), and casacore::True.

setCacheSize() [3/3]

void casacore::TiledFileAccess::setCacheSize ( uInt  nbuckets, Bool  forceSmaller = True  )

inline

Set the cache size for accessing the data.

When the give cache size exceeds the maximum cache size with more than 10%, the maximum cache size is used instead.
When forceSmaller is False, the cache is not resized when the new size is smaller.

Definition at line 232 of file TiledFileAccess.h.

References itsCube, casacore::TSMCube::setCacheSize(), and casacore::True.

setMaximumCacheSize()

void casacore::TiledFileAccess::setMaximumCacheSize

(

uInt64

nbytes

)

Set the maximum cache size (in bytes).

0 means no maximum.

shape()

const IPosition& casacore::TiledFileAccess::shape ( ) const

inline

Get the shape of the array.

Definition at line 193 of file TiledFileAccess.h.

References casacore::TSMCube::cubeShape(), and itsCube.

showCacheStatistics()

void casacore::TiledFileAccess::showCacheStatistics ( ostream &  os ) const

inline

Show the cache statistics.

Definition at line 189 of file TiledFileAccess.h.

References itsCube, and casacore::TSMCube::showCacheStatistics().

tileShape()

const IPosition& casacore::TiledFileAccess::tileShape ( ) const

inline

Get the shape of the tiles.

Definition at line 197 of file TiledFileAccess.h.

References itsCube, and casacore::TSMCube::tileShape().

Member Data Documentation

itsCube

TSMCube* casacore::TiledFileAccess::itsCube

private

Definition at line 249 of file TiledFileAccess.h.

Referenced by cacheSize(), clearCache(), flush(), setCacheSize(), shape(), showCacheStatistics(), and tileShape().

itsDataType

DataType casacore::TiledFileAccess::itsDataType

private

Definition at line 253 of file TiledFileAccess.h.

Referenced by dataType().

itsLocalPixelSize

uInt casacore::TiledFileAccess::itsLocalPixelSize

private

Definition at line 251 of file TiledFileAccess.h.

itsTSM

TiledFileHelper* casacore::TiledFileAccess::itsTSM

private

Definition at line 250 of file TiledFileAccess.h.

itsWritable

Bool casacore::TiledFileAccess::itsWritable

private

Definition at line 252 of file TiledFileAccess.h.

Referenced by isWritable().

---

The documentation for this class was generated from the following file:

• tables/DataMan/TiledFileAccess.h