BasicImageAnonymizer.cs

/*=========================================================================
 
  Program: GDCM (Grassroots DICOM). A DICOM library
 
  Copyright (c) 2006-2011 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
 
     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.
 
=========================================================================*/
 
/*
 */
using System;
using gdcm;
 
public class BasicImageAnonymizer
{
  public static int Main(string[] args)
    {
    string filename = args[0];
 
    // instantiate the reader:
    gdcm.ImageReader reader = new gdcm.ImageReader();
    reader.SetFileName( filename );
 
    if (!reader.Read()) return 1;
 
    Image ir = reader.GetImage();
 
    uint[] dims = {0, 0, 0};
    dims[0] = ir.GetDimension(0);
    dims[1] = ir.GetDimension(1);
    dims[2] = ir.GetDimension(2);
    System.Console.WriteLine( "Dim:" + dims[0] );
    System.Console.WriteLine( "Dim:" + dims[1] );
    System.Console.WriteLine( "Dim:" + dims[2] );
 
    // buffer to get the pixels
    byte[] buffer = new byte[ ir.GetBufferLength()];
    System.Console.WriteLine( "Dim:" + ir.GetBufferLength() );
    ir.GetBuffer( buffer );
 
    for (uint z = 0; z < dims[2]; z++)
      {
      for (uint y = 0; y < dims[1] / 2; y++) // only half Y
        {
        for (uint x = 0; x < dims[0] / 2; x++) // only half X
          {
          buffer[ (z * dims[1] + y) * dims[0] + x ] = 0; // works when pixel type == UINT8
          }
        }
      }
 
    DataElement pixeldata = new DataElement( new Tag(0x7fe0,0x0010) );
    pixeldata.SetByteValue( buffer, new VL( (uint)buffer.Length ) );
    ir.SetDataElement( pixeldata );
    ir.SetTransferSyntax( new TransferSyntax( TransferSyntax.TSType.ExplicitVRLittleEndian ) );
 
    ImageChangeTransferSyntax change = new ImageChangeTransferSyntax();
    change.SetTransferSyntax( new TransferSyntax( TransferSyntax.TSType.JPEGLSLossless ) );
    change.SetInput( ir );
    if( !change.Change() )
      {
      System.Console.WriteLine( "Could not change: " + filename );
      return 1;
      }
 
    ImageWriter writer = new ImageWriter();
    writer.SetFileName( "out.dcm" );
    writer.SetFile( reader.GetFile() );
    writer.SetImage( change.GetOutput() );
    bool ret = writer.Write();
    if( !ret )
      {
      return 1;
      }
 
 
    return 0;
    }
}