Package org.biojava.nbio.aaproperties.xml

Class AminoAcidCompositionTable

java.lang.Object
org.biojava.nbio.aaproperties.xml.AminoAcidCompositionTable
public class AminoAcidCompositionTable extends Object

  • Constructor Details

    • AminoAcidCompositionTable

      public AminoAcidCompositionTable()

    • AminoAcidCompositionTable

      public AminoAcidCompositionTable(List<AminoAcidComposition> aaList)

  • Method Details

    • getAminoAcidCompoundSet

      public ModifiedAminoAcidCompoundSet getAminoAcidCompoundSet()

    • getAminoacid

      public List<AminoAcidComposition> getAminoacid()

    • setAminoacid

      public void setAminoacid(List<AminoAcidComposition> aminoacid)

    • getSymbolSet

      public Set<Character> getSymbolSet()

    • computeMolecularWeight

      public void computeMolecularWeight(ElementTable eTable)
      Computes and store the molecular weight of each amino acid by its symbol in aaSymbol2MolecularWeight.
      Parameters:
      eTable - Stores the mass of elements and isotopes

    • getMolecularWeight

      public double getMolecularWeight(Character aaSymbol) throws NullPointerException
      Parameters:
      aaSymbol - Standard symbol of Amino Acid
      Returns:
      the molecular weight given its symbol
      Throws:
      NullPointerException - thrown if AminoAcidCompositionTable.computeMolecularWeight(ElementTable) is not called before this method