AlignerHelper.Cut

java.lang.Object

org.biojava.nbio.alignment.routines.AlignerHelper.Cut

Enclosing class:: AlignerHelper

public static class AlignerHelper.Cut extends Object

Defines a 'cut' row for divide-and-conquer alignment in which a new anchor is found.

Constructor Summary

Constructors

Constructor

Description

Cut(int queryIndex, int[] dim)
Method Summary

Modifier and Type

Method

Description

int

getQueryIndex()

int

getTargetIndex(int z)

void

update(int x, AlignerHelper.Subproblem subproblem, AlignerHelper.Last[][] pointers)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- Cut
  
  public Cut(int queryIndex, int[] dim)
Method Details
- getQueryIndex
  
  public int getQueryIndex()
- getTargetIndex
  
  public int getTargetIndex(int z)
- update
  
  public void update(int x, AlignerHelper.Subproblem subproblem, AlignerHelper.Last[][] pointers)