Package org.biojava.nbio.alignment.template

Class CallablePairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>

java.lang.Object
org.biojava.nbio.alignment.template.CallablePairwiseSequenceAligner<S,C>
Type Parameters:
S - each Sequence of the alignment pair is of type S
C - each element of an AlignedSequence is a Compound of type C
All Implemented Interfaces:
Callable<SequencePair<S,C>>
public class CallablePairwiseSequenceAligner<S extends Sequence<C>,C extends Compound> extends Object implements Callable<SequencePair<S,C>>
Implements a concurrency wrapper for a PairwiseSequenceAligner.
Author:
Mark Chapman

  • Constructor Details

    • CallablePairwiseSequenceAligner

      public CallablePairwiseSequenceAligner(PairwiseSequenceAligner<S,C> psa)
      Creates a pairwise sequence alignment task for simplified parallel execution.
      Parameters:
      psa - already initialized pairwise sequence aligner

  • Method Details