Package org.biojava.nbio.alignment.template

Interface ProfileProfileAligner<S extends Sequence<C>,C extends Compound>

Type Parameters:
S - each Sequence in the pair of alignment Profiles is of type S
C - each element of an AlignedSequence is a Compound of type C
All Superinterfaces:
Aligner<S,C>, ProfileProfileScorer<S,C>, Scorer
All Known Implementing Classes:
AbstractProfileProfileAligner, SimpleProfileProfileAligner
public interface ProfileProfileAligner<S extends Sequence<C>,C extends Compound> extends Aligner<S,C>, ProfileProfileScorer<S,C>
Defines an Aligner for a pair of Profiles.
Author:
Mark Chapman

  • Method Details

    • getPair

      ProfilePair<S,C> getPair()
      Returns alignment profile pair.
      Returns:
      alignment profile pair