Class Hierarchy
- java.lang.Object
- org.biojava.nbio.alignment.template.AbstractScorer (implements org.biojava.nbio.alignment.template.Scorer)
- org.biojava.nbio.alignment.template.AbstractMatrixAligner<S,
C> (implements org.biojava.nbio.alignment.template.MatrixAligner<S, C>) - org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner<S,
C> (implements org.biojava.nbio.alignment.template.PairwiseSequenceAligner<S, C>) - org.biojava.nbio.alignment.template.AbstractProfileProfileAligner<S,
C> (implements org.biojava.nbio.alignment.template.ProfileProfileAligner<S, C>)
- org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner<S,
- org.biojava.nbio.alignment.template.AbstractMatrixAligner<S,
- org.biojava.nbio.alignment.template.CallablePairwiseSequenceAligner<S,
C> (implements java.util.concurrent.Callable<V>) - org.biojava.nbio.alignment.template.CallablePairwiseSequenceScorer<S,
C> (implements java.util.concurrent.Callable<V>) - org.biojava.nbio.alignment.template.CallableProfileProfileAligner<S,
C> (implements java.util.concurrent.Callable<V>)
- org.biojava.nbio.alignment.template.AbstractScorer (implements org.biojava.nbio.alignment.template.Scorer)
Interface Hierarchy
- org.biojava.nbio.alignment.template.GapPenalty
- org.biojava.nbio.alignment.template.HierarchicalClusterer<S,
C> - org.biojava.nbio.alignment.template.Scorer
- org.biojava.nbio.alignment.template.Aligner<S,
C> - org.biojava.nbio.alignment.template.MatrixAligner<S,
C> - org.biojava.nbio.alignment.template.PairwiseSequenceAligner<S,
C> (also extends org.biojava.nbio.alignment.template.PairwiseSequenceScorer<S, C>) - org.biojava.nbio.alignment.template.PartitionRefiner<S,
C> (also extends org.biojava.nbio.alignment.template.ProfileProfileScorer<S, C>) - org.biojava.nbio.alignment.template.ProfileProfileAligner<S,
C> (also extends org.biojava.nbio.alignment.template.ProfileProfileScorer<S, C>) - org.biojava.nbio.alignment.template.RescoreRefiner<S,
C>
- org.biojava.nbio.alignment.template.MatrixAligner<S,
- org.biojava.nbio.alignment.template.PairwiseSequenceScorer<S,
C> - org.biojava.nbio.alignment.template.PairInProfileScorer<S,
C> - org.biojava.nbio.alignment.template.PairwiseSequenceAligner<S,
C> (also extends org.biojava.nbio.alignment.template.Aligner<S, C>)
- org.biojava.nbio.alignment.template.PairInProfileScorer<S,
- org.biojava.nbio.alignment.template.ProfileProfileScorer<S,
C> - org.biojava.nbio.alignment.template.PartitionRefiner<S,
C> (also extends org.biojava.nbio.alignment.template.Aligner<S, C>) - org.biojava.nbio.alignment.template.ProfileProfileAligner<S,
C> (also extends org.biojava.nbio.alignment.template.Aligner<S, C>)
- org.biojava.nbio.alignment.template.PartitionRefiner<S,
- org.biojava.nbio.alignment.template.Aligner<S,
- javax.swing.tree.TreeNode
- org.biojava.nbio.alignment.template.GuideTreeNode<S,
C>
- org.biojava.nbio.alignment.template.GuideTreeNode<S,
Enum Class Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
- org.biojava.nbio.alignment.template.GapPenalty.Type
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)