AAIndexFileParser

java.lang.Object

org.biojava.nbio.core.alignment.matrices.AAIndexFileParser

public class AAIndexFileParser extends Object

Constructor Summary

Constructors

Constructor

Description

AAIndexFileParser()
Method Summary

Modifier and Type

Method

Description

Map<String,SubstitutionMatrix<AminoAcidCompound>>

getMatrices()

void

parse(InputStream inputStream)

parse an inputStream that points to an AAINDEX database file

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- AAIndexFileParser
  
  public AAIndexFileParser()
Method Details
- parse
  
  public void parse(InputStream inputStream) throws IOException
  
  parse an inputStream that points to an AAINDEX database file
  
  Parameters:
  
  inputStream -
  
  Throws:
  
  IOException
- getMatrices
  
  public Map<String,SubstitutionMatrix<AminoAcidCompound>> getMatrices()