DefaultAAIndexProvider

java.lang.Object

org.biojava.nbio.core.alignment.matrices.DefaultAAIndexProvider

All Implemented Interfaces:: AAIndexProvider

public class DefaultAAIndexProvider extends Object implements AAIndexProvider

The default provider for AAINDEX loads substitution matrices from the AAINDEX file in the resources directory

Author:: Andreas Prlic

Constructor Summary

Constructors

Constructor

Description

DefaultAAIndexProvider()
Method Summary

Modifier and Type

Method

Description

InputStream

getInputStreamToAAindexFile()

SubstitutionMatrix<AminoAcidCompound>

getMatrix(String matrixName)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- DefaultAAIndexProvider
  
  public DefaultAAIndexProvider()
Method Details
- getMatrix
  
  public SubstitutionMatrix<AminoAcidCompound> getMatrix(String matrixName)
  
  Specified by:
  
  getMatrix in interface AAIndexProvider
- getInputStreamToAAindexFile
  
  public InputStream getInputStreamToAAindexFile()