Package org.biojava.nbio.core.search.io

Class Hit

java.lang.Object
org.biojava.nbio.core.search.io.Hit
All Implemented Interfaces:
Iterable<Hsp>
public abstract class Hit extends Object implements Iterable<Hsp>
This class models a search Hit. You will retrieve a list of this using iterator of a Result Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan
Author:
Paolo Pavan

  • Constructor Details

  • Method Details

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • equals

      public boolean equals(Object obj)
      Implements conceptual comparisons of search results. Fields unrelated to search are deliberately not considered.
      Overrides:
      equals in class Object
      Returns:

    • getHitNum

      public int getHitNum()

    • getHitId

      public String getHitId()

    • getHitDef

      public String getHitDef()

    • getHitAccession

      public String getHitAccession()

    • getHitLen

      public int getHitLen()

    • getHitSequence

      public Sequence getHitSequence()
      returns the reference to the original and whole sequence hit in the database. Available only if the ResultFactory implements setHitReferences and it was used before the parsing with SearchIO
      Returns:
      Sequence object

    • iterator

      public Iterator<Hsp> iterator()
      Specified by:
      iterator in interface Iterable<Hsp>