AmbiguityDNACompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.DNACompoundSet

org.biojava.nbio.core.sequence.compound.AmbiguityDNACompoundSet

All Implemented Interfaces:: CompoundSet<NucleotideCompound>

public class AmbiguityDNACompoundSet extends DNACompoundSet

Author:: Andy Yates

Constructor Summary

Constructors

Constructor

Description

AmbiguityDNACompoundSet()
Method Summary

Modifier and Type

Method

Description

static AmbiguityDNACompoundSet

getDNACompoundSet()

Methods inherited from class org.biojava.nbio.core.sequence.compound.DNACompoundSet
newNucleotideCompound

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet
addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet
addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- AmbiguityDNACompoundSet
  
  public AmbiguityDNACompoundSet()
Method Details
- getDNACompoundSet
  
  public static AmbiguityDNACompoundSet getDNACompoundSet()