java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompound

org.biojava.nbio.core.sequence.compound.CodonCompound

All Implemented Interfaces:: Compound

public class CodonCompound extends AbstractCompound

Define a codon

Author:: Andy Yates

Constructor Summary

Constructors

Constructor

Description

CodonCompound(NucleotideCompound one, NucleotideCompound two, NucleotideCompound three, boolean start)
Method Summary

Modifier and Type

Method

Description

boolean

equals(Object obj)

boolean

equalsIgnoreCase(Compound compound)

String

getDescription()

String

getLongName()

Float

getMolecularWeight()

NucleotideCompound

getOne()

String

getShortName()

NucleotideCompound

getThree()

NucleotideCompound

getTwo()

int

hashCode()

boolean

isStart()

void

setDescription(String description)

void

setLongName(String longName)

void

setMolecularWeight(Float molecularWeight)

void

setShortName(String shortName)

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompound
getBase, getUpperedBase, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details
- CodonCompound
  
  public CodonCompound(NucleotideCompound one, NucleotideCompound two, NucleotideCompound three, boolean start)
Method Details
- equalsIgnoreCase
  
  public boolean equalsIgnoreCase(Compound compound)
  
  Specified by:
  
  equalsIgnoreCase in interface Compound
  
  Overrides:
  
  equalsIgnoreCase in class AbstractCompound
- equals
  
  public boolean equals(Object obj)
  
  Overrides:
  
  equals in class AbstractCompound
- hashCode
  
  public int hashCode()
  
  Overrides:
  
  hashCode in class AbstractCompound
- getOne
  
  public NucleotideCompound getOne()
- getTwo
  
  public NucleotideCompound getTwo()
- getThree
  
  public NucleotideCompound getThree()
- isStart
  
  public boolean isStart()
- getDescription
  
  public String getDescription()
  
  Specified by:
  
  getDescription in interface Compound
  
  Overrides:
  
  getDescription in class AbstractCompound
- getLongName
  
  public String getLongName()
  
  Specified by:
  
  getLongName in interface Compound
  
  Overrides:
  
  getLongName in class AbstractCompound
- getMolecularWeight
  
  public Float getMolecularWeight()
  
  Specified by:
  
  getMolecularWeight in interface Compound
  
  Overrides:
  
  getMolecularWeight in class AbstractCompound
- getShortName
  
  public String getShortName()
  
  Specified by:
  
  getShortName in interface Compound
  
  Overrides:
  
  getShortName in class AbstractCompound
- setDescription
  
  public void setDescription(String description)
  
  Specified by:
  
  setDescription in interface Compound
  
  Overrides:
  
  setDescription in class AbstractCompound
- setLongName
  
  public void setLongName(String longName)
  
  Specified by:
  
  setLongName in interface Compound
  
  Overrides:
  
  setLongName in class AbstractCompound
- setMolecularWeight
  
  public void setMolecularWeight(Float molecularWeight)
  
  Specified by:
  
  setMolecularWeight in interface Compound
  
  Overrides:
  
  setMolecularWeight in class AbstractCompound
- setShortName
  
  public void setShortName(String shortName)
  
  Specified by:
  
  setShortName in interface Compound
  
  Overrides:
  
  setShortName in class AbstractCompound

Class CodonCompound

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompound

Methods inherited from class java.lang.Object

Constructor Details

CodonCompound

Method Details

equalsIgnoreCase

equals

hashCode

getOne

getTwo

getThree

isStart

getDescription

getLongName

getMolecularWeight

getShortName

setDescription

setLongName

setMolecularWeight

setShortName