RNACompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.RNACompoundSet

All Implemented Interfaces:: CompoundSet<NucleotideCompound>

Direct Known Subclasses:: AmbiguityRNACompoundSet

public class RNACompoundSet extends AbstractNucleotideCompoundSet<NucleotideCompound>

Author:: Andy Yates

Constructor Summary

Constructors

Constructor

Description

RNACompoundSet()
Method Summary

Modifier and Type

Method

Description

static RNACompoundSet

getRNACompoundSet()

NucleotideCompound

newNucleotideCompound(String base, String complement, String... equivalents)

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet
addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet
addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- RNACompoundSet
  
  public RNACompoundSet()
Method Details
- getRNACompoundSet
  
  public static RNACompoundSet getRNACompoundSet()
- newNucleotideCompound
  
  public NucleotideCompound newNucleotideCompound(String base, String complement, String... equivalents)
  
  Specified by:
  
  newNucleotideCompound in class AbstractNucleotideCompoundSet<NucleotideCompound>