Class Edit.Delete<C extends Compound>
java.lang.Object
org.biojava.nbio.core.sequence.edits.Edit.AbstractEdit<C>
org.biojava.nbio.core.sequence.edits.Edit.Delete<C>
- All Implemented Interfaces:
Edit<C>
Implementation which allows for the deletion of bases from a Sequence
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.edits.Edit
Edit.AbstractEdit<C extends Compound>, Edit.Delete<C extends Compound>, Edit.Insert<C extends Compound>, Edit.Substitute<C extends Compound> -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptiongetFivePrime(Sequence<C> editingSequence) Should return the 5-prime end of the given Sequence according to the edit.protected intprotected intgetThreePrime(Sequence<C> editingSequence) Should return the 3-prime end of the given Sequence according to the edit.Methods inherited from class org.biojava.nbio.core.sequence.edits.Edit.AbstractEdit
edit, getEmptySequence, getEnd, getStart, getTargetSequence, setSequence, setStringSequence
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Constructor Details
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Delete
public Delete(int position) -
Delete
public Delete(int start, int end)
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Method Details
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getRealStart
protected int getRealStart() -
getRealEnd
protected int getRealEnd() -
getFivePrime
Description copied from class:Edit.AbstractEditShould return the 5-prime end of the given Sequence according to the edit. An empty Sequence is valid.- Specified by:
getFivePrimein classEdit.AbstractEdit<C extends Compound>
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getThreePrime
Description copied from class:Edit.AbstractEditShould return the 3-prime end of the given Sequence according to the edit. An empty Sequence is valid.- Specified by:
getThreePrimein classEdit.AbstractEdit<C extends Compound>
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