GenbankWriter

java.lang.Object

org.biojava.nbio.core.sequence.io.GenbankWriter<S,C>

public class GenbankWriter<S extends Sequence<?>,C extends Compound> extends Object

Author:: mckeee1

Constructor Summary

Constructors

Constructor

Description

GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat)

Use default line length of 60

GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat, int lineLength)

Set custom lineLength
Method Summary

Modifier and Type

Method

Description

int

getLineLength()

void

process()

Allow an override of operating system line separator for programs that needs a specific CRLF or CR or LF option

void

setLineLength(int lineLength)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- GenbankWriter
  
  public GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat)
  
  Use default line length of 60
  
  Parameters:
  
  os -
  
  sequences -
  
  headerFormat -
- GenbankWriter
  
  public GenbankWriter(OutputStream os, Collection<S> sequences, GenbankHeaderFormatInterface<S,C> headerFormat, int lineLength)
  
  Set custom lineLength
  
  Parameters:
  
  os -
  
  sequences -
  
  headerFormat -
  
  lineLength -
Method Details
- process
  
  public void process() throws Exception
  
  Allow an override of operating system line separator for programs that needs a specific CRLF or CR or LF option
  
  Parameters:
  
  lineSeparator -
  
  Throws:
  
  Exception
- getLineLength
  
  public int getLineLength()
  
  Returns:
  
  the lineLength
- setLineLength
  
  public void setLineLength(int lineLength)
  
  Parameters:
  
  lineLength - the lineLength to set