org.biojava.nbio.core.sequence Class Hierarchy

Class Hierarchy

java.lang.Object
- org.biojava.nbio.core.sequence.template.AbstractSequence<C> (implements org.biojava.nbio.core.sequence.template.Sequence<C>)
  - org.biojava.nbio.core.sequence.BasicSequence<C>
  - org.biojava.nbio.core.sequence.DNASequence
    - org.biojava.nbio.core.sequence.CDSSequence
    - org.biojava.nbio.core.sequence.ChromosomeSequence
    - org.biojava.nbio.core.sequence.ExonSequence
    - org.biojava.nbio.core.sequence.GeneSequence
    - org.biojava.nbio.core.sequence.IntronSequence
    - org.biojava.nbio.core.sequence.StartCodonSequence
    - org.biojava.nbio.core.sequence.StopCodonSequence
    - org.biojava.nbio.core.sequence.TranscriptSequence
  - org.biojava.nbio.core.sequence.ProteinSequence
  - org.biojava.nbio.core.sequence.RNASequence
- org.biojava.nbio.core.sequence.AccessionID
- org.biojava.nbio.core.sequence.CDSComparator (implements java.util.Comparator<T>)
- org.biojava.nbio.core.sequence.ExonComparator (implements java.util.Comparator<T>)
- org.biojava.nbio.core.sequence.MultipleSequenceAlignment<S,C> (implements org.biojava.nbio.core.sequence.template.LightweightProfile<S,C>)
- org.biojava.nbio.core.sequence.SequenceComparator (implements java.util.Comparator<T>)
- org.biojava.nbio.core.sequence.SequenceOptimizationHints
- org.biojava.nbio.core.sequence.TaxonomyID

Enum Class Hierarchy

java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
  - org.biojava.nbio.core.sequence.DataSource
  - org.biojava.nbio.core.sequence.DNASequence.DNAType
  - org.biojava.nbio.core.sequence.SequenceOptimizationHints.SequenceCollection
  - org.biojava.nbio.core.sequence.SequenceOptimizationHints.SequenceUsage
  - org.biojava.nbio.core.sequence.Strand