SequenceReader

All Superinterfaces:: Accessioned, Iterable<C>, Sequence<C>

All Known Subinterfaces:: ProxySequenceReader<C>

All Known Implementing Classes:: ArrayListProxySequenceReader, ArrayListSequenceReader, BitSequenceReader, FourBitSequenceReader, GenbankProxySequenceReader, JoiningSequenceReader, RnaSequenceView, SequenceFileProxyLoader, SingleCompoundSequenceReader, StringProxySequenceReader, TwoBitSequenceReader, UniprotProxySequenceReader

public interface SequenceReader<C extends Compound> extends Sequence<C>

Method Summary

Modifier and Type

Method

Description

void

setCompoundSet(CompoundSet<C> compoundSet)

void

setContents(String sequence)

Methods inherited from interface org.biojava.nbio.core.sequence.template.Accessioned
getAccession

Methods inherited from interface java.lang.Iterable
forEach, iterator, spliterator

Methods inherited from interface org.biojava.nbio.core.sequence.template.Sequence
countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Method Details
- setCompoundSet
  
  void setCompoundSet(CompoundSet<C> compoundSet)
- setContents
  
  void setContents(String sequence) throws CompoundNotFoundException
  
  Throws:
  
  CompoundNotFoundException