Interface Table
- All Known Implementing Classes:
IUPACParser.IUPACTable
public interface Table
Provides a way of separating us from the specific
IUPACParser.IUPACTable even
though this is the only implementing class for the interface.- Author:
- ayates
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Nested Class Summary
Nested ClassesModifier and TypeInterfaceDescriptionstatic classClass used to hold three nucleotides together and allow for equality to be assessed in a case insensitive manner.static classInstance of a Codon which is 3NucleotideCompounds, its correspondingAminoAcidCompoundand if it is a start or stop codon. -
Method Summary
Modifier and TypeMethodDescriptiongetCodonCompoundSet(CompoundSet<NucleotideCompound> rnaCompounds, CompoundSet<AminoAcidCompound> aminoAcidCompounds) getCodons(CompoundSet<NucleotideCompound> nucelotides, CompoundSet<AminoAcidCompound> aminoAcids) booleanisStart(AminoAcidCompound compound) Returns true if the given compound could have been a start amino acid; this does not assert if the codon that actually coded for the amino acid was a start codon.
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Method Details
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getCodons
List<Table.Codon> getCodons(CompoundSet<NucleotideCompound> nucelotides, CompoundSet<AminoAcidCompound> aminoAcids) -
getCodonCompoundSet
CompoundSet<Table.Codon> getCodonCompoundSet(CompoundSet<NucleotideCompound> rnaCompounds, CompoundSet<AminoAcidCompound> aminoAcidCompounds) -
isStart
Returns true if the given compound could have been a start amino acid; this does not assert if the codon that actually coded for the amino acid was a start codon. This is as accurate a call as we can make with anAminoAcidCompound.
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