Package org.biojava.nbio.genome.homology
Class GFF3FromUniprotBlastHits
java.lang.Object
org.biojava.nbio.genome.homology.GFF3FromUniprotBlastHits
- Author:
- Scooter Willis
, Mark Chapman
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic voidvoidprocess(File xmlBlastHits, double ecutoff, LinkedHashMap<String, GeneSequence> geneSequenceHashMap, OutputStream gff3Output) voidprocess(LinkedHashMap<String, ArrayList<String>> hits, LinkedHashMap<String, GeneSequence> geneSequenceHashMap, OutputStream gff3Output)
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Constructor Details
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GFF3FromUniprotBlastHits
public GFF3FromUniprotBlastHits()
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Method Details
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process
public void process(File xmlBlastHits, double ecutoff, LinkedHashMap<String, GeneSequence> geneSequenceHashMap, OutputStream gff3Output) throws Exception- Throws:
Exception
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process
public void process(LinkedHashMap<String, ArrayList<String>> hits, LinkedHashMap<String, throws ExceptionGeneSequence> geneSequenceHashMap, OutputStream gff3Output) - Throws:
Exception
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main
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