CytobandParser

java.lang.Object

org.biojava.nbio.genome.parsers.cytoband.CytobandParser

public class CytobandParser extends Object

Parses the cytoband (karyotype) file from UCSC.

Field Summary

Fields

Modifier and Type

Field

Description

static final String

DEFAULT_LOCATION
Constructor Summary

Constructors

Constructor

Description

CytobandParser()
Method Summary

Modifier and Type

Method

Description

SortedSet<Cytoband>

getAllCytobands(InputStream instream)

SortedSet<Cytoband>

getAllCytobands(URL u)

static void

main(String[] args)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- DEFAULT_LOCATION
  
  public static final String DEFAULT_LOCATION
  See Also:
  
  Constant Field Values
Constructor Details
- CytobandParser
  
  public CytobandParser()
Method Details
- main
  
  public static void main(String[] args)
- getAllCytobands
  
  public SortedSet<Cytoband> getAllCytobands(URL u) throws IOException
  
  Throws:
  
  IOException
- getAllCytobands
  
  public SortedSet<Cytoband> getAllCytobands(InputStream instream) throws IOException
  
  Throws:
  
  IOException