Package org.biojava.nbio.genome.parsers.genename

Class GeneChromosomePosition

java.lang.Object
org.biojava.nbio.genome.parsers.genename.GeneChromosomePosition
All Implemented Interfaces:
Serializable, Comparable<GeneChromosomePosition>
public class GeneChromosomePosition extends Object implements Comparable<GeneChromosomePosition>, Serializable
See Also:

  • Constructor Details

    • GeneChromosomePosition

      public GeneChromosomePosition()

  • Method Details

    • getGeneName

      public String getGeneName()

    • setGeneName

      public void setGeneName(String geneName)

    • getGenebankId

      public String getGenebankId()

    • setGenebankId

      public void setGenebankId(String genebankId)

    • getChromosome

      public String getChromosome()

    • setChromosome

      public void setChromosome(String chromosome)

    • getOrientation

      public Character getOrientation()

    • setOrientation

      public void setOrientation(Character orientation)

    • getTranscriptionStart

      public Integer getTranscriptionStart()

    • setTranscriptionStart

      public void setTranscriptionStart(Integer transcriptionStart)

    • getTranscriptionEnd

      public Integer getTranscriptionEnd()

    • setTranscriptionEnd

      public void setTranscriptionEnd(Integer transcriptionEnd)

    • getCdsStart

      public Integer getCdsStart()

    • setCdsStart

      public void setCdsStart(Integer cdsStart)

    • getCdsEnd

      public Integer getCdsEnd()

    • setCdsEnd

      public void setCdsEnd(Integer cdsEnd)

    • getExonCount

      public int getExonCount()

    • setExonCount

      public void setExonCount(int exonCount)

    • getExonStarts

      public List<Integer> getExonStarts()

    • setExonStarts

      public void setExonStarts(List<Integer> exonStarts)

    • getExonEnds

      public List<Integer> getExonEnds()

    • setExonEnds

      public void setExonEnds(List<Integer> exonEnds)

    • compareTo

      public int compareTo(GeneChromosomePosition o)
      Specified by:
      compareTo in interface Comparable<GeneChromosomePosition>

    • toString

      public String toString()
      Overrides:
      toString in class Object