org.biojava.nbio.genome.parsers.genename.GeneChromosomePositionParser

public class GeneChromosomePositionParser extends Object

A parser that parses a file from the UCSC genome browser that contains mapping of gene name to chromosome positions

Field Details
- DEFAULT_MAPPING_URL
  
  public static final String DEFAULT_MAPPING_URL
  See Also:
  
  Constant Field Values
Constructor Details
- GeneChromosomePositionParser
  
  public GeneChromosomePositionParser()
Method Details
- main
  
  public static void main(String[] args)
- getChromosomeMappings
  
  public static List<GeneChromosomePosition> getChromosomeMappings() throws IOException
  
  Throws:
  
  IOException
- getChromosomeMappings
  
  public static List<GeneChromosomePosition> getChromosomeMappings(InputStream inStream) throws IOException
  
  Throws:
  
  IOException

Class GeneChromosomePositionParser

Field Summary