Package org.biojava.nbio.genome.uniprot

Class UniprotToFasta

java.lang.Object
org.biojava.nbio.genome.uniprot.UniprotToFasta
public class UniprotToFasta extends Object
Author:
Scooter

  • Constructor Details

    • UniprotToFasta

      public UniprotToFasta()

  • Method Details

    • main

      public static void main(String[] args)

    • process

      public void process(String uniprotDatFileName, String fastaFileName) throws Exception
      Convert a Uniprot sequence file to a fasta file. Allows you to download all sequence data for a species and convert to fasta to be used in a blast database
      Parameters:
      uniprotDatFileName -
      fastaFileName -
      Throws:
      Exception