Package org.biojava.nbio.ontology

Class Term.Impl

java.lang.Object
org.biojava.nbio.ontology.AbstractTerm
org.biojava.nbio.ontology.Term.Impl
All Implemented Interfaces:
Serializable, Term, Annotatable
Direct Known Subclasses:
Variable.Impl
Enclosing interface:
Term
public static class Term.Impl extends AbstractTerm implements Term, Serializable
Simple in-memory implementation of an ontology term.
See Also:

  • Constructor Details

  • Method Details

    • addSynonym

      public void addSynonym(Object synonym)
      Description copied from interface: Term
      Add a synonym for this term.
      Specified by:
      addSynonym in interface Term
      Parameters:
      synonym - the synonym

    • removeSynonym

      public void removeSynonym(Object synonym)
      Description copied from interface: Term
      Remove a synonym for this term.
      Specified by:
      removeSynonym in interface Term

    • getSynonyms

      public Object[] getSynonyms()
      Description copied from interface: Term
      Return the synonyms for this term.
      Specified by:
      getSynonyms in interface Term
      Returns:
      the synonyms

    • getName

      public String getName()
      Description copied from interface: Term
      Return the name of this term.
      Specified by:
      getName in interface Term
      Returns:
      the name of the term

    • setAnnotation

      public void setAnnotation(Annotation annotation)

    • setSynonyms

      public void setSynonyms(Set<Object> synonyms)

    • getDescription

      public String getDescription()
      Description copied from interface: Term
      Return a human-readable description of this term, or the empty string if none is available.
      Specified by:
      getDescription in interface Term
      Returns:
      the description of the term

    • getOntology

      public Ontology getOntology()
      Description copied from interface: Term
      Return the ontology in which this term exists.
      Specified by:
      getOntology in interface Term
      Returns:
      the ontology

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • getAnnotation

      public Annotation getAnnotation()
      Description copied from interface: Annotatable
      Should return the associated annotation object.
      Specified by:
      getAnnotation in interface Annotatable
      Returns:
      an Annotation object, never null

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • equals

      public boolean equals(Object obj)
      Overrides:
      equals in class Object