org.biojava.nbio.phosphosite.Dataset

public class Dataset extends Object

Phosphosite is available under the PhosphoSitePlus® is licensed under Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License and is freely available for non-commercial purposes from http://www.phosphosite.org/staticDownloads.do Please acknowledge PhosphoSitePlus®, www.phosphosite.org" at appropriate locations. Please cite : “Hornbeck PV, Kornhauser JM, Tkachev S, Zhang B, Skrzypek E, Murray B, Latham V, Sullivan M (2012) PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res. 40(Database issue), D261–70.”. Created by ap3 on 31/10/2014.

Field Summary

Fields

Modifier and Type

Field

Description

static final String

ACETYLATION

static final String

DISEASE_ASSOC

static final String

METHYLATION

static final String

PHOSPHORYLATION

static final String

REGULATORY

static final String

SUMOYLATION

static final String

UBIQUITINATION
Constructor Summary

Constructors

Constructor

Description

Dataset()
Method Summary

Modifier and Type

Method

Description

static void

copyFile(File src, File dst)

void

download()

void

downloadFile(URL u, File localFile)

File

getLocalDir()

File[]

getLocalFiles()

static void

main(String[] args)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- ACETYLATION
  
  public static final String ACETYLATION
  See Also:
  
  Constant Field Values
- DISEASE_ASSOC
  
  public static final String DISEASE_ASSOC
  See Also:
  
  Constant Field Values
- METHYLATION
  
  public static final String METHYLATION
  See Also:
  
  Constant Field Values
- PHOSPHORYLATION
  
  public static final String PHOSPHORYLATION
  See Also:
  
  Constant Field Values
- REGULATORY
  
  public static final String REGULATORY
  See Also:
  
  Constant Field Values
- SUMOYLATION
  
  public static final String SUMOYLATION
  See Also:
  
  Constant Field Values
- UBIQUITINATION
  
  public static final String UBIQUITINATION
  See Also:
  
  Constant Field Values
Constructor Details
- Dataset
  
  public Dataset()
Method Details
- getLocalFiles
  
  public File[] getLocalFiles()
- getLocalDir
  
  public File getLocalDir()
- download
  
  public void download()
- downloadFile
  
  public void downloadFile(URL u, File localFile) throws IOException
  
  Throws:
  
  IOException
- copyFile
  
  public static void copyFile(File src, File dst) throws IOException
  
  Throws:
  
  IOException
- main
  
  public static void main(String[] args)

Class Dataset

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Details

ACETYLATION

DISEASE_ASSOC

METHYLATION

PHOSPHORYLATION

REGULATORY

SUMOYLATION

UBIQUITINATION

Constructor Details

Dataset

Method Details

getLocalFiles

getLocalDir

download

downloadFile

copyFile

main