ClusterAltAligs

java.lang.Object

org.biojava.nbio.structure.align.ClusterAltAligs

public class ClusterAltAligs extends Object

A class that clusters alternative alignments according to their similarity.

Since:: 1.5
Version:: %I% %G%
Author:: Andreas Prlic

Field Summary

Fields

Modifier and Type

Field

Description

static final int

DEFAULT_CLUSTER_CUTOFF
Constructor Summary

Constructors

Constructor

Description

ClusterAltAligs()
Method Summary

Modifier and Type

Method

Description

static void

cluster(AlternativeAlignment[] aligs)

static void

cluster(AlternativeAlignment[] aligs, int cutoff)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- DEFAULT_CLUSTER_CUTOFF
  
  public static final int DEFAULT_CLUSTER_CUTOFF
  See Also:
  
  Constant Field Values
Constructor Details
- ClusterAltAligs
  
  public ClusterAltAligs()
Method Details
- cluster
  
  public static void cluster(AlternativeAlignment[] aligs)
- cluster
  
  public static void cluster(AlternativeAlignment[] aligs, int cutoff)