Package org.biojava.nbio.structure.align

Class MultiThreadedDBSearch

java.lang.Object
org.biojava.nbio.structure.align.MultiThreadedDBSearch
public class MultiThreadedDBSearch extends Object
Performs a multi threaded database search for an input protein structure
Author:
Andreas Prlic

  • Constructor Details

  • Method Details

    • getCustomFile1

      public String getCustomFile1()

    • setCustomFile1

      public void setCustomFile1(String customFile1)
      set the file path for a custom, user provided file, not a standard PDB file.
      Parameters:
      customFile1 -

    • getCustomChain1

      public String getCustomChain1()

    • setCustomChain1

      public void setCustomChain1(String customChain1)
      sets a chain in a custom, user provided file
      Parameters:
      customChain1 -

    • getAtomCache

      public AtomCache getAtomCache()

    • setAtomCache

      public void setAtomCache(AtomCache cache)

    • getAlgorithm

      public StructureAlignment getAlgorithm()

    • setAlgorithm

      public void setAlgorithm(StructureAlignment algo)

    • getOutFile

      public String getOutFile()

    • setOutFile

      public void setOutFile(String outFile)

    • getLegend

      public static String getLegend(String algorithmName)

    • getResultFile

      public File getResultFile()

    • setResultFile

      public void setResultFile(File resultList)

    • run

      public void run()

    • interrupt

      public void interrupt()
      stops what is currently happening and does not continue

    • cleanup

      public void cleanup()