Class Hierarchy
- java.lang.Object
- org.biojava.nbio.structure.align.AbstractStructureAlignment (implements org.biojava.nbio.structure.align.StructureAlignment)
- org.biojava.nbio.structure.align.ce.CeMain (implements org.biojava.nbio.structure.align.StructureAlignment)
- org.biojava.nbio.structure.align.ce.CeCPMain
- org.biojava.nbio.structure.align.ce.CeSideChainMain (implements org.biojava.nbio.structure.align.StructureAlignment)
- org.biojava.nbio.structure.align.ce.OptimalCECPMain
- org.biojava.nbio.structure.align.ce.CeMain (implements org.biojava.nbio.structure.align.StructureAlignment)
- org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor (implements org.biojava.nbio.structure.align.ce.UserArgumentProcessor)
- org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor
- org.biojava.nbio.structure.align.ce.CeCPUserArgumentProcessor
- org.biojava.nbio.structure.align.ce.CeSideChainUserArgumentProcessor
- org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor
- org.biojava.nbio.structure.align.ce.CECalculator
- org.biojava.nbio.structure.align.ce.CeCalculatorEnhanced
- org.biojava.nbio.structure.align.ce.CeCPMain.CPRange
- org.biojava.nbio.structure.align.ce.CeParameters (implements org.biojava.nbio.structure.align.ce.ConfigStrucAligParams)
- org.biojava.nbio.structure.align.ce.CECPParameters
- org.biojava.nbio.structure.align.ce.OptimalCECPParameters
- org.biojava.nbio.structure.align.ce.GuiWrapper
- org.biojava.nbio.structure.align.ce.StartupParameters
- org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor.CeStartupParams
- org.biojava.nbio.structure.align.ce.CeCPUserArgumentProcessor.CeCPStartupParams
- org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor.CeStartupParams
- org.biojava.nbio.structure.align.AbstractStructureAlignment (implements org.biojava.nbio.structure.align.StructureAlignment)
Interface Hierarchy
- org.biojava.nbio.structure.align.ce.ConfigStrucAligParams
- org.biojava.nbio.structure.align.ce.MatrixListener
- org.biojava.nbio.structure.align.ce.UserArgumentProcessor
Enum Class Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
- org.biojava.nbio.structure.align.ce.CECPParameters.DuplicationHint
- org.biojava.nbio.structure.align.ce.CeParameters.ScoringStrategy
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)