PdbPair

java.lang.Object

org.biojava.nbio.structure.align.client.PdbPair

All Implemented Interfaces:: Comparable<PdbPair>

public class PdbPair extends Object implements Comparable<PdbPair>

A pair for structure alignment

Author:: Andreas Prlic name1 is always < name2

Constructor Summary

Constructors

Constructor

Description

PdbPair(String name1, String name2)

PdbPair(StructureName name1, StructureName name2)
Method Summary

Modifier and Type

Method

Description

int

compareTo(PdbPair o)

boolean

equals(Object obj)

String

getChainId1()

String

getChainId2()

String

getName1()

String

getName2()

String

getPDBCode1()

String

getPDBCode2()

PdbPair

getReverse()

int

hashCode()

void

setName1(String name1)

void

setName2(String name2)

String

toString()

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details
- PdbPair
  
  public PdbPair(String name1, String name2)
- PdbPair
  
  public PdbPair(StructureName name1, StructureName name2)
Method Details
- getName1
  
  public String getName1()
- setName1
  
  public void setName1(String name1)
- getName2
  
  public String getName2()
- setName2
  
  public void setName2(String name2)
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object
- hashCode
  
  public int hashCode()
  
  Overrides:
  
  hashCode in class Object
- equals
  
  public boolean equals(Object obj)
  
  Overrides:
  
  equals in class Object
- compareTo
  
  public int compareTo(PdbPair o)
  
  Specified by:
  
  compareTo in interface Comparable<PdbPair>
- getPDBCode1
  
  public String getPDBCode1() throws StructureException
  
  Throws:
  
  StructureException
- getPDBCode2
  
  public String getPDBCode2() throws StructureException
  
  Throws:
  
  StructureException
- getChainId1
  
  public String getChainId1()
- getChainId2
  
  public String getChainId2()
- getReverse
  
  public PdbPair getReverse()