FatCatUserArgumentProcessor.FatCatStartupParams

java.lang.Object

org.biojava.nbio.structure.align.ce.StartupParameters

org.biojava.nbio.structure.align.fatcat.FatCatUserArgumentProcessor.FatCatStartupParams

Enclosing class:: FatCatUserArgumentProcessor

protected class FatCatUserArgumentProcessor.FatCatStartupParams extends StartupParameters

Constructor Summary

Constructors

Constructor

Description

FatCatStartupParams()
Method Summary

Modifier and Type

Method

Description

double

getDisCut()

int

getFragLen()

int

getMaxTra()

Double

getRmsdCut()

boolean

isFlexible()

void

setDisCut(double disCut)

void

setFlexible(boolean flexible)

void

setFragLen(int fragLen)

void

setMaxTra(int maxTra)

void

setRmsdCut(Double rmsdCut)

Methods inherited from class org.biojava.nbio.structure.align.ce.StartupParameters
getAlignPairs, getCacheFilePath, getFile1, getFile2, getNrCPU, getOutFile, getPdb1, getPdb2, getPdbFilePath, getSaveOutputDir, getSearchFile, getShowDBresult, isAutoFetch, isDomainSplit, isOutputPDB, isPdbDirSplit, isPrintCE, isPrintFatCat, isPrintXML, isShow3d, isShowMenu, setAlignPairs, setAutoFetch, setCacheFilePath, setDomainSplit, setFile1, setFile2, setNrCPU, setOutFile, setOutputPDB, setPdb1, setPdb2, setPdbDirSplit, setPdbFilePath, setPrintCE, setPrintFatCat, setPrintXML, setSaveOutputDir, setSearchFile, setShow3d, setShowDBresult, setShowMenu, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- FatCatStartupParams
  
  public FatCatStartupParams()
Method Details
- getFragLen
  
  public int getFragLen()
- setFragLen
  
  public void setFragLen(int fragLen)
- getRmsdCut
  
  public Double getRmsdCut()
- setRmsdCut
  
  public void setRmsdCut(Double rmsdCut)
- getDisCut
  
  public double getDisCut()
- setDisCut
  
  public void setDisCut(double disCut)
- getMaxTra
  
  public int getMaxTra()
- setMaxTra
  
  public void setMaxTra(int maxTra)
- isFlexible
  
  public boolean isFlexible()
- setFlexible
  
  public void setFlexible(boolean flexible)