AFPCalculator

java.lang.Object

org.biojava.nbio.structure.align.fatcat.calc.AFPCalculator

public class AFPCalculator extends Object

a class that performs calculations on AFPCHains

Author:: Andreas Prlic

Field Summary

Fields

Modifier and Type

Field

Description

static final boolean

debug
Constructor Summary

Constructors

Constructor

Description

AFPCalculator()
Method Summary

Modifier and Type

Method

Description

static final void

extractAFPChains(FatCatParameters params, AFPChain afpChain, Atom[] ca1, Atom[] ca2)

static final void

sortAfps(AFPChain afpChain, Atom[] ca1, Atom[] ca2)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- debug
  
  public static final boolean debug
  See Also:
  
  Constant Field Values
Constructor Details
- AFPCalculator
  
  public AFPCalculator()
Method Details
- extractAFPChains
  
  public static final void extractAFPChains(FatCatParameters params, AFPChain afpChain, Atom[] ca1, Atom[] ca2) throws StructureException
  
  Throws:
  
  StructureException
- sortAfps
  
  public static final void sortAfps(AFPChain afpChain, Atom[] ca1, Atom[] ca2)