FatCatAligner

java.lang.Object

org.biojava.nbio.structure.align.fatcat.calc.FatCatAligner

public class FatCatAligner extends Object

A class that does calculations on an AFPChain

Author:: Andreas Prlic

Field Summary

Fields

Modifier and Type

Field

Description

static final boolean

debug

static final boolean

printTimeStamps
Constructor Summary

Constructors

Constructor

Description

FatCatAligner()
Method Summary

Modifier and Type

Method

Description

void

align(Atom[] ca1, Atom[] ca2, boolean doRigid, FatCatParameters params)

AFPChain

getAfpChain()

Group[]

getTwistedGroups()

void

setTwistedGroups(Group[] twistedGroups)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- debug
  
  public static final boolean debug
  See Also:
  
  Constant Field Values
- printTimeStamps
  
  public static final boolean printTimeStamps
  See Also:
  
  Constant Field Values
Constructor Details
- FatCatAligner
  
  public FatCatAligner()
Method Details
- getAfpChain
  
  public AFPChain getAfpChain()
- getTwistedGroups
  
  public Group[] getTwistedGroups()
- setTwistedGroups
  
  public void setTwistedGroups(Group[] twistedGroups)
- align
  
  public void align(Atom[] ca1, Atom[] ca2, boolean doRigid, FatCatParameters params) throws StructureException
  
  Throws:
  
  StructureException