Package org.biojava.nbio.structure.align.helper

Class JointFragments

java.lang.Object
org.biojava.nbio.structure.align.helper.JointFragments
public class JointFragments extends Object
A utility class that defines which set of atoms are considered to be on equivalent positions.

  • Constructor Details

    • JointFragments

      public JointFragments()

  • Method Details

    • setIdxlist

      public void setIdxlist(List<int[]> idxs)
      Stores the alignment between the residues of several fragments. Each int[] stores the residue numbers of several equivalent residues.

    • getRms

      public double getRms()

    • setRms

      public void setRms(double rms)

    • getIdxlist

      public List<int[]> getIdxlist()

    • add

      public void add(int p1, int p2, int start, int end)

    • toString

      public String toString()
      Overrides:
      toString in class Object