Package org.biojava.nbio.structure.align.multiple.util

Class MultipleAlignmentDisplay

java.lang.Object
org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentDisplay
public class MultipleAlignmentDisplay extends Object
Utility functions to generalize the visualization of MultipleAlignments in molecular viewers. The methods return different types of selectors for the aligned residues in the alignment.
Since:
4.2.0
Author:
Andreas Prlic, Aleix Lafita, Spencer Bliven

  • Constructor Details

    • MultipleAlignmentDisplay

      public MultipleAlignmentDisplay()

  • Method Details

    • getRotatedAtoms

      public static List<Atom[]> getRotatedAtoms(MultipleAlignment multAln) throws StructureException
      New structures are downloaded if they were not cached in the alignment and they are entirely transformed here with the superposition information in the Multiple Alignment.
      Parameters:
      multAln -
      Returns:
      list of transformed AtomArrays
      Throws:
      StructureException