Class AlignmentResult

Method Details

• toString

  public String toString()

  Overrides:

  toString in class Object

• getAlignments

  public AlternativeAlignment[] getAlignments()

• setAlignments

  public void setAlignments(AlternativeAlignment[] alignments)

  we only keep the first alternative...

  Parameters:

  alignments -

• getPdb1

  public String getPdb1()

• setPdb1

  public void setPdb1(String pdb1)

• getPdb2

  public String getPdb2()

• setPdb2

  public void setPdb2(String pdb2)

• getChain1

  public String getChain1()

• setChain1

  public void setChain1(String chain1)

• getChain2

  public String getChain2()

• setChain2

  public void setChain2(String chain2)

• getLength1

  public int getLength1()

• setLength1

  public void setLength1(int length1)

• getLength2

  public int getLength2()

• setLength2

  public void setLength2(int length2)

• getCalculationTime

  public long getCalculationTime()

• setCalculationTime

  public void setCalculationTime(long calculationTime)

• getIoTime

  public long getIoTime()

• setIoTime

  public void setIoTime(long ioTime)

• serialize

  public void serialize(File output) throws FileNotFoundException, IOException

  Throws:

  FileNotFoundException

  IOException

• deserialize

  public static AlignmentResult deserialize(File output) throws FileNotFoundException, IOException, ClassNotFoundException

  Throws:

  FileNotFoundException

  IOException

  ClassNotFoundException