Package org.biojava.nbio.structure.align.pairwise

Class FragmentPair

java.lang.Object
org.biojava.nbio.structure.align.pairwise.FragmentPair
public class FragmentPair extends Object
a pair of fragments of two protein structures
Since:
1.5
Version:
%I% %G%
Author:
Andreas Prlic

  • Constructor Details

    • FragmentPair

      public FragmentPair(int length, int p1, int p2)

  • Method Details

    • clone

      public Object clone()
      Overrides:
      clone in class Object

    • getCluster

      public int getCluster()

    • setCluster

      public void setCluster(int cluster)

    • getContacts

      public int getContacts()

    • setContacts

      public void setContacts(int contacts)

    • getCovered

      public int getCovered()

    • setCovered

      public void setCovered(int covered)

    • getLength

      public int getLength()

    • setLength

      public void setLength(int length)

    • getPos1

      public int getPos1()

    • setPos1

      public void setPos1(int pos1)

    • getPos2

      public int getPos2()

    • setPos2

      public void setPos2(int pos2)

    • getRms

      public double getRms()

    • setRms

      public void setRms(double rms)

    • getRot

      public Matrix getRot()

    • setRot

      public void setRot(Matrix rot)

    • getTrans

      public Atom getTrans()

    • setTrans

      public void setTrans(Atom trans)

    • getUnitv

      public Atom getUnitv()

    • setUnitv

      public void setUnitv(Atom unitv)

    • getUsed

      public int getUsed()

    • setUsed

      public void setUsed(int used)

    • getCenter1

      public Atom getCenter1()

    • setCenter1

      public void setCenter1(Atom center1)

    • getCenter2

      public Atom getCenter2()

    • setCenter2

      public void setCenter2(Atom center2)

    • toString

      public String toString()
      Overrides:
      toString in class Object