AFPChainFlipper

java.lang.Object

org.biojava.nbio.structure.align.xml.AFPChainFlipper

public class AFPChainFlipper extends Object

Constructor Summary

Constructors

Constructor

Description

AFPChainFlipper()
Method Summary

Modifier and Type

Method

Description

static AFPChain

flipChain(AFPChain o)

Flip the position of name1 and name2 (as well as all underlying data) in an AFPChain.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- AFPChainFlipper
  
  public AFPChainFlipper()
Method Details
- flipChain
  
  public static AFPChain flipChain(AFPChain o) throws StructureException
  
  Flip the position of name1 and name2 (as well as all underlying data) in an AFPChain. This is a utility function for AFPChainXMLParser. You will have to call AFPCHainXMLParser.rebuildAFPChain in order to get twisted groups...
  
  Parameters:
  
  o - ... the original AFPCHain that should be flipped
  
  Returns:
  
  a cloned AFPCHain which the positions of name1 and name2 flipped.
  
  Throws:
  
  StructureException