AFPChainXMLConverter

java.lang.Object

org.biojava.nbio.structure.align.xml.AFPChainXMLConverter

public class AFPChainXMLConverter extends Object

Constructor Summary

Constructors

Constructor

Description

AFPChainXMLConverter()
Method Summary

Modifier and Type

Method

Description

static void

printXMLEQRInferPositions(PrettyXMLWriter xml, AFPChain afpChain, int bk, Atom[] ca1, Atom[] ca2)

static void

printXMLHeader(PrettyXMLWriter xml, AFPChain afpChain)

static String

toXML(AFPChain afpChain)

static void

toXML(AFPChain afpChain, StringWriter swriter, Atom[] ca1, Atom[] ca2)

Write the XML representation to a StringWriter

static String

toXML(AFPChain afpChain, Atom[] ca1, Atom[] ca2)

Convert an afpChain to a simple XML representation

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- AFPChainXMLConverter
  
  public AFPChainXMLConverter()
Method Details
- toXML
  
  public static String toXML(AFPChain afpChain, Atom[] ca1, Atom[] ca2) throws IOException
  
  Convert an afpChain to a simple XML representation
  
  Parameters:
  
  afpChain -
  
  Returns:
  
  XML representation of the AFPCHain
  
  Throws:
  
  IOException
- toXML
  
  public static void toXML(AFPChain afpChain, StringWriter swriter, Atom[] ca1, Atom[] ca2) throws IOException
  
  Write the XML representation to a StringWriter
  
  Parameters:
  
  afpChain -
  
  swriter -
  
  Throws:
  
  IOException
- printXMLEQRInferPositions
  
  public static void printXMLEQRInferPositions(PrettyXMLWriter xml, AFPChain afpChain, int bk, Atom[] ca1, Atom[] ca2) throws IOException
  
  Throws:
  
  IOException
- toXML
  
  public static String toXML(AFPChain afpChain) throws IOException
  
  Throws:
  
  IOException
- printXMLHeader
  
  public static void printXMLHeader(PrettyXMLWriter xml, AFPChain afpChain) throws IOException
  
  Throws:
  
  IOException