Package org.biojava.nbio.structure.domain

Interface DomainProvider

All Known Implementing Classes:
PDBDomainProvider, RemoteDomainProvider
public interface DomainProvider
Decomposes a structure from the PDB into representative domains

  • Method Details

    • getDomainNames

      SortedSet<String> getDomainNames(String name) throws IOException, StructureException
      Get a list of constituent domain identifiers
      Parameters:
      name - a structure identifier
      Returns:
      A list of domain names
      Throws:
      IOException - For IO errors getting the domains
      StructureException - For errors converting name to a valid identifier

    • getRepresentativeDomains

      SortedSet<String> getRepresentativeDomains() throws IOException
      Get the full list of representative domains for the PDB. The exact definition representatives is implementation-specific, but should cover as many structures as possible.
      Returns:
      A full list of all representative domains recognized by this provider
      Throws:
      IOException - For IO errors getting the representatives