Package org.biojava.nbio.structure.domain

Class LocalProteinDomainParser

java.lang.Object
org.biojava.nbio.structure.domain.LocalProteinDomainParser
public class LocalProteinDomainParser extends Object
Protein Domain Parser is a an algorithm that attempts at assigning domains for 3D protein structures. Since domains in proteins are difficult to define, results detected by automated algorithms have to be taken with a grain of salt. see
J Mol Biol. 2004 Jun 4;339(3):647-78.

Toward consistent assignment of structural domains in proteins.

Veretnik S, Bourne PE, Alexandrov NN, Shindyalov IN.
This implementation is based on a Java port of the PDP algorithm, as described in:
Since:
3.0.2
Author:
Andreas Prlic