Package org.biojava.nbio.structure.domain

Class PDBDomainProvider

java.lang.Object
org.biojava.nbio.structure.domain.PDBDomainProvider
All Implemented Interfaces:
DomainProvider
public class PDBDomainProvider extends Object implements DomainProvider
Class to fetch domains through the RCSB's REST API.
Author:
Spencer Bliven

  • Field Details

  • Constructor Details

    • PDBDomainProvider

      public PDBDomainProvider()

    • PDBDomainProvider

      public PDBDomainProvider(String base, int cutoff)
      Parameters:
      base -
      cutoff -

  • Method Details

    • getDomainNames

      public SortedSet<String> getDomainNames(String name)
      Gets a list of domain representatives for a given PDB ID.
      Specified by:
      getDomainNames in interface DomainProvider
      Parameters:
      name - a structure identifier
      Returns:
      A list of domain names

    • getRepresentativeDomains

      public SortedSet<String> getRepresentativeDomains()
      Gets a list of all domain representatives
      Specified by:
      getRepresentativeDomains in interface DomainProvider
      Returns:
      A full list of all representative domains recognized by this provider

    • main

      public static void main(String[] args)