Package org.biojava.nbio.structure.gui.util

Class AlignmentCalc

java.lang.Object
org.biojava.nbio.structure.gui.util.AlignmentCalc
All Implemented Interfaces:
Runnable
public class AlignmentCalc extends Object implements Runnable
A class that obtains two structures via DAS and aligns them This is done in a separate thread. It is possible to register Event listeners to get notification of when the download has finished.
Since:
1.7
Version:
%I% %G%
Author:
Andreas Prlic

  • Constructor Details

    • AlignmentCalc

      public AlignmentCalc(AlignmentGui parent, Structure s1, Structure s2)
      requests an alignment of pdb1 vs pdb 2. Chain 1 and chain2 are optional. If they are empty strings, they are ignored
      Parameters:
      parent - the alignment gui frame that interacts with this class
      s1 - structure 1
      s2 - structure 2

  • Method Details

    • run

      public void run()
      Specified by:
      run in interface Runnable

    • interrupt

      public void interrupt()
      stops what is currently happening and does not continue

    • cleanup

      public void cleanup()