PDBBioAssemblyParser

java.lang.Object

org.biojava.nbio.structure.io.PDBBioAssemblyParser

public class PDBBioAssemblyParser extends Object

Parses REMARK 350 records in a PDB file and creates transformations to construct the quaternary structure of a protein from an asymmetric unit

Author:: Peter Rose, Andreas Prlic

Constructor Summary

Constructors

Constructor

Description

PDBBioAssemblyParser()
Method Summary

Modifier and Type

Method

Description

Map<Integer,BioAssemblyInfo>

getTransformationMap()

Returns a map of bioassembly transformations

void

pdb_REMARK_350_Handler(String line)

Parses REMARK 350 line.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- PDBBioAssemblyParser
  
  public PDBBioAssemblyParser()
Method Details
- pdb_REMARK_350_Handler
  
  public void pdb_REMARK_350_Handler(String line)
  
  Parses REMARK 350 line. See format description: http://www.wwpdb.org/documentation/format33/remarks2.html
  
  Parameters:
  
  line -
- getTransformationMap
  
  public Map<Integer,BioAssemblyInfo> getTransformationMap()
  
  Returns a map of bioassembly transformations
  
  Returns: