Class BiologicalAssemblyBuilder
java.lang.Object
org.biojava.nbio.structure.quaternary.BiologicalAssemblyBuilder
Reconstructs the quaternary structure of a protein from an asymmetric unit
- Author:
- Peter Rose, Andreas Prlic
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptiongetBioUnitTransformationList(PdbxStructAssembly psa, List<PdbxStructAssemblyGen> psags, List<PdbxStructOperList> operators) Returns a list of transformation matrices for the generation of a macromolecular assembly for the specified assembly Id.rebuildQuaternaryStructure(Structure asymUnit, List<BiologicalAssemblyTransformation> transformations)
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Constructor Details
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BiologicalAssemblyBuilder
public BiologicalAssemblyBuilder()
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Method Details
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rebuildQuaternaryStructure
public Structure rebuildQuaternaryStructure(Structure asymUnit, List<BiologicalAssemblyTransformation> transformations) -
getBioUnitTransformationList
public ArrayList<BiologicalAssemblyTransformation> getBioUnitTransformationList(PdbxStructAssembly psa, List<PdbxStructAssemblyGen> psags, List<PdbxStructOperList> operators) Returns a list of transformation matrices for the generation of a macromolecular assembly for the specified assembly Id.- Parameters:
assemblyId- Id of the macromolecular assembly to be generated- Returns:
- list of transformation matrices to generate macromolecular assembly
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