GetRepresentatives

java.lang.Object

org.biojava.nbio.structure.rcsb.GetRepresentatives

public class GetRepresentatives extends Object

TODO Move this to Representatives.

Constructor Summary

Constructors

Constructor

Description

GetRepresentatives()
Method Summary

Modifier and Type

Method

Description

static SortedSet<String>

getAll()

Returns the current list of all PDB IDs.

static SortedSet<StructureName>

getRepresentatives(int sequenceIdentity)

Returns a representative set of PDB protein chains at the specified sequence identity cutoff.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- GetRepresentatives
  
  public GetRepresentatives()
Method Details
- getRepresentatives
  
  public static SortedSet<StructureName> getRepresentatives(int sequenceIdentity)
  
  Returns a representative set of PDB protein chains at the specified sequence identity cutoff. See http://www.pdb.org/pdb/statistics/clusterStatistics.do for more information.
  
  Parameters:
  
  sequenceIdentity - sequence identity threshold
  
  Returns:
  
  PdbChainKey set of representatives
- getAll
  
  public static SortedSet<String> getAll()
  
  Returns the current list of all PDB IDs.
  
  Returns:
  
  PdbChainKey set of all PDB IDs.