Package org.biojava.nbio.structure.secstruc

Class SecStrucInfo

java.lang.Object
org.biojava.nbio.structure.secstruc.SecStrucInfo
Direct Known Subclasses:
SecStrucState
public class SecStrucInfo extends Object
Container for the secondary structure information of a single residue. This class is designed to be stored inside an Amino Acid object. It can also contain a back-reference to its parent AA.
Since:
4.1.1
Author:
Aleix Lafita

  • Field Details

    • PDB_AUTHOR_ASSIGNMENT

      public static final String PDB_AUTHOR_ASSIGNMENT
      Secondary strucuture assigned by the PDB author
      See Also:

    • DSSP_ASSIGNMENT

      public static final String DSSP_ASSIGNMENT
      Secondary strucuture parsed from a DSSP output file
      See Also:

    • BIOJAVA_ASSIGNMENT

      public static final String BIOJAVA_ASSIGNMENT
      Secondary strucuture calculated and assigned by DSSP of BioJava
      See Also:

    • type

      protected SecStrucType type

    • assignment

      protected String assignment

    • parent

      protected Group parent

  • Constructor Details

  • Method Details